Comparative proteomics reveals that central metabolism changes are associated with resistance against Sporisorium scitamineum in sugarcane
Identifieur interne : 000281 ( Main/Exploration ); précédent : 000280; suivant : 000282Comparative proteomics reveals that central metabolism changes are associated with resistance against Sporisorium scitamineum in sugarcane
Auteurs : Yachun Su [République populaire de Chine] ; Liping Xu [République populaire de Chine] ; Zhuqing Wang [République populaire de Chine] ; Qiong Peng [République populaire de Chine] ; Yuting Yang [République populaire de Chine] ; Yun Chen [République populaire de Chine] ; Youxiong Que [République populaire de Chine]Source :
- BMC Genomics [ 1471-2164 ] ; 2016.
Abstract
Sugarcane smut, which is caused by
We identified 273 and 341 differentially expressed proteins in sugarcane smut-resistant (Yacheng05-179) and susceptible (ROC22) genotypes at 48 h after inoculation with
These results indicated complex resistance-related events in sugarcane-
The online version of this article (doi:10.1186/s12864-016-3146-8) contains supplementary material, which is available to authorized users.
Url:
DOI: 10.1186/s12864-016-3146-8
PubMed: 27733120
PubMed Central: 5062822
Affiliations:
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last="Xu">Liping Xu</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Sugarcane Biology and Genetic Breeding, Ministry of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, 350002 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Sugarcane Biology and Genetic Breeding, Ministry of Agriculture, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea><placeName><settlement type="city">Fuzhou</settlement><region type="province">Fujian</region></placeName></affiliation></author><author><name sortKey="Wang, Zhuqing" sort="Wang, Zhuqing" uniqKey="Wang Z" first="Zhuqing" last="Wang">Zhuqing Wang</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Sugarcane Biology and Genetic Breeding, Ministry of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, 350002 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Sugarcane Biology and Genetic Breeding, Ministry of Agriculture, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea><placeName><settlement type="city">Fuzhou</settlement><region type="province">Fujian</region></placeName></affiliation></author><author><name sortKey="Peng, Qiong" sort="Peng, Qiong" uniqKey="Peng Q" first="Qiong" last="Peng">Qiong Peng</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Sugarcane Biology and Genetic Breeding, Ministry of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, 350002 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Sugarcane Biology and Genetic Breeding, Ministry of Agriculture, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea><placeName><settlement type="city">Fuzhou</settlement><region type="province">Fujian</region></placeName></affiliation></author><author><name sortKey="Yang, Yuting" sort="Yang, Yuting" uniqKey="Yang Y" first="Yuting" last="Yang">Yuting Yang</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Sugarcane Biology and Genetic Breeding, Ministry of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, 350002 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Sugarcane Biology and Genetic Breeding, Ministry of Agriculture, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea><placeName><settlement type="city">Fuzhou</settlement><region type="province">Fujian</region></placeName></affiliation></author><author><name sortKey="Chen, Yun" sort="Chen, Yun" uniqKey="Chen Y" first="Yun" last="Chen">Yun Chen</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Sugarcane Biology and Genetic Breeding, Ministry of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, 350002 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Sugarcane Biology and Genetic Breeding, Ministry of Agriculture, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea><placeName><settlement type="city">Fuzhou</settlement><region type="province">Fujian</region></placeName></affiliation></author><author><name sortKey="Que, Youxiong" sort="Que, Youxiong" uniqKey="Que Y" first="Youxiong" last="Que">Youxiong Que</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Sugarcane Biology and Genetic Breeding, Ministry of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, 350002 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Sugarcane Biology and Genetic Breeding, Ministry of Agriculture, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea><placeName><settlement type="city">Fuzhou</settlement><region type="province">Fujian</region></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="Aff2">Guangxi Collaborative Innovation Center of Sugarcane Industry, Guangxi University, Nanning, 530005 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Guangxi Collaborative Innovation Center of Sugarcane Industry, Guangxi University, Nanning</wicri:regionArea><wicri:noRegion>Nanning</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">27733120</idno><idno type="pmc">5062822</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5062822</idno><idno type="RBID">PMC:5062822</idno><idno type="doi">10.1186/s12864-016-3146-8</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000610</idno><idno type="wicri:Area/Pmc/Curation">000609</idno><idno 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Chine</country><wicri:regionArea>Key Laboratory of Sugarcane Biology and Genetic Breeding, Ministry of Agriculture, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea><placeName><settlement type="city">Fuzhou</settlement><region type="province">Fujian</region></placeName></affiliation></author><author><name sortKey="Xu, Liping" sort="Xu, Liping" uniqKey="Xu L" first="Liping" last="Xu">Liping Xu</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Sugarcane Biology and Genetic Breeding, Ministry of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, 350002 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Sugarcane Biology and Genetic Breeding, Ministry of Agriculture, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea><placeName><settlement type="city">Fuzhou</settlement><region type="province">Fujian</region></placeName></affiliation></author><author><name sortKey="Wang, Zhuqing" sort="Wang, Zhuqing" uniqKey="Wang Z" first="Zhuqing" last="Wang">Zhuqing Wang</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Sugarcane Biology and Genetic Breeding, Ministry of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, 350002 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Sugarcane Biology and Genetic Breeding, Ministry of Agriculture, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea><placeName><settlement type="city">Fuzhou</settlement><region type="province">Fujian</region></placeName></affiliation></author><author><name sortKey="Peng, Qiong" sort="Peng, Qiong" uniqKey="Peng Q" first="Qiong" last="Peng">Qiong Peng</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Sugarcane Biology and Genetic Breeding, Ministry of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, 350002 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Sugarcane Biology and Genetic Breeding, Ministry of Agriculture, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea><placeName><settlement type="city">Fuzhou</settlement><region type="province">Fujian</region></placeName></affiliation></author><author><name sortKey="Yang, Yuting" sort="Yang, Yuting" uniqKey="Yang Y" first="Yuting" last="Yang">Yuting Yang</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Sugarcane Biology and Genetic Breeding, Ministry of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, 350002 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Sugarcane Biology and Genetic Breeding, Ministry of Agriculture, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea><placeName><settlement type="city">Fuzhou</settlement><region type="province">Fujian</region></placeName></affiliation></author><author><name sortKey="Chen, Yun" sort="Chen, Yun" uniqKey="Chen Y" first="Yun" last="Chen">Yun Chen</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Sugarcane Biology and Genetic Breeding, Ministry of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, 350002 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Sugarcane Biology and Genetic Breeding, Ministry of Agriculture, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea><placeName><settlement type="city">Fuzhou</settlement><region type="province">Fujian</region></placeName></affiliation></author><author><name sortKey="Que, Youxiong" sort="Que, Youxiong" uniqKey="Que Y" first="Youxiong" last="Que">Youxiong Que</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Sugarcane Biology and Genetic Breeding, Ministry of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, 350002 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Sugarcane Biology and Genetic Breeding, Ministry of Agriculture, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea><placeName><settlement type="city">Fuzhou</settlement><region type="province">Fujian</region></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="Aff2">Guangxi Collaborative Innovation Center of Sugarcane Industry, Guangxi University, Nanning, 530005 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Guangxi Collaborative Innovation Center of Sugarcane Industry, Guangxi University, Nanning</wicri:regionArea><wicri:noRegion>Nanning</wicri:noRegion></affiliation></author></analytic><series><title level="j">BMC Genomics</title><idno type="eISSN">1471-2164</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Background</title><p>Sugarcane smut, which is caused by <italic>Sporisorium scitamineum</italic>, has been threatening global sugarcane production. Breeding smut resistant sugarcane varieties has been proven to be the most effective method of controlling this particular disease. However, a lack of genome information of sugarcane has hindered the development of genome-assisted resistance breeding programs. Furthermore, the molecular basis of sugarcane response to <italic>S. scitamineum</italic> infection at the proteome level was incomplete and combining proteomic and transcriptional analysis has not yet been conducted.</p></sec><sec><title>Results</title><p>We identified 273 and 341 differentially expressed proteins in sugarcane smut-resistant (Yacheng05-179) and susceptible (ROC22) genotypes at 48 h after inoculation with <italic>S. scitamineum</italic> by employing an isobaric tag for relative and absolute quantification (iTRAQ). The proteome quantitative data were then validated by multiple reaction monitoring (MRM). The integrative analysis showed that the correlations between the quantitative proteins and the corresponding genes that was obtained in our previous transcriptome study were poor, which were 0.1502 and 0.2466 in Yacheng05-179 and ROC22, respectively, thereby revealing a post-transcriptional event during Yacheng05-179-<italic>S. scitamineum</italic> incompatible interaction and ROC22-<italic>S. scitamineum</italic> compatible interaction. Most differentially expressed proteins were closely related to sugarcane smut resistance such as beta-1,3-glucanase, peroxidase, pathogenesis-related protein 1 (PR1), endo-1,4-beta-xylanase, heat shock protein, and lectin. Ethylene and gibberellic acid pathways, phenylpropanoid metabolism and PRs, such as PR1, PR2, PR5 and PR14, were more active in Yacheng05-179, which suggested of their possible roles in sugarcane smut resistance. However, calcium signaling, reactive oxygen species, nitric oxide, and abscisic acid pathways in Yacheng05-179 were repressed by <italic>S. scitamineum</italic> and might not be crucial for defense against this particular pathogen.</p></sec><sec><title>Conclusions</title><p>These results indicated complex resistance-related events in sugarcane-<italic>S. scitamineum</italic> interaction, and provided novel insights into the molecular mechanism underlying the response of sugarcane to <italic>S. scitamineum</italic> infection.</p></sec><sec><title>Electronic supplementary material</title><p>The online version of this article (doi:10.1186/s12864-016-3146-8) contains supplementary material, which is available to authorized users.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Sundar, Ar" uniqKey="Sundar A">AR Sundar</name></author><author><name sortKey="Barnabas, El" uniqKey="Barnabas E">EL Barnabas</name></author><author><name 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Pl" uniqKey="Rodriguez P">PL Rodriguez</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gosti, F" uniqKey="Gosti F">F Gosti</name></author><author><name sortKey="Beaudoin, N" uniqKey="Beaudoin N">N Beaudoin</name></author><author><name sortKey="Serizet, C" uniqKey="Serizet C">C Serizet</name></author><author><name sortKey="Webb, Aa" uniqKey="Webb A">AA Webb</name></author><author><name sortKey="Vartanian, N" uniqKey="Vartanian N">N Vartanian</name></author><author><name sortKey="Giraudat, J" uniqKey="Giraudat J">J Giraudat</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Takken, Fl" uniqKey="Takken F">FL Takken</name></author><author><name sortKey="Joosten, Mh" uniqKey="Joosten M">MH Joosten</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Boggs, Cl" uniqKey="Boggs C">CL Boggs</name></author><author><name sortKey="Jackson, La" uniqKey="Jackson L">LA 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Chen</name><name sortKey="Peng, Qiong" sort="Peng, Qiong" uniqKey="Peng Q" first="Qiong" last="Peng">Qiong Peng</name><name sortKey="Que, Youxiong" sort="Que, Youxiong" uniqKey="Que Y" first="Youxiong" last="Que">Youxiong Que</name><name sortKey="Que, Youxiong" sort="Que, Youxiong" uniqKey="Que Y" first="Youxiong" last="Que">Youxiong Que</name><name sortKey="Wang, Zhuqing" sort="Wang, Zhuqing" uniqKey="Wang Z" first="Zhuqing" last="Wang">Zhuqing Wang</name><name sortKey="Xu, Liping" sort="Xu, Liping" uniqKey="Xu L" first="Liping" last="Xu">Liping Xu</name><name sortKey="Yang, Yuting" sort="Yang, Yuting" uniqKey="Yang Y" first="Yuting" last="Yang">Yuting Yang</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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